HL_4V7E_105

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

ACUGAGAGCU

Length

10 nucleotides

Bulged bases

4V7E|1|Ad|G|1247, 4V7E|1|Ad|G|1249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_105 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2278

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V7E|1|Ad|A|1242
4V7E|1|Ad|C|1243
4V7E|1|Ad|U|1244
4V7E|1|Ad|G|1245
4V7E|1|Ad|A|1246
4V7E|1|Ad|G|1247
4V7E|1|Ad|A|1248
4V7E|1|Ad|G|1249
4V7E|1|Ad|C|1250
4V7E|1|Ad|U|1251

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S19

Chain Bd

40S ribosomal protein S14

Chain Bf

40S ribosomal protein S31e