HL_4V7E_107

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

4V7E|1|Ad|U|1318

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_107 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1509

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V7E|1|Ad|G|1313
4V7E|1|Ad|U|1314
4V7E|1|Ad|U|1315
4V7E|1|Ad|A|1316
4V7E|1|Ad|A|1317
4V7E|1|Ad|U|1318
4V7E|1|Ad|U|1319
4V7E|1|Ad|C|1320

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S5

Chain BR

40S ribosomal protein S17E

Chain Bc

40S ribosomal protein S28E