HL_4V7I_007

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_007 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.4093

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7I|1|A8|U|158
4V7I|1|A8|G|159
4V7I|1|A8|A|160
4V7I|1|A8|A|161
4V7I|1|A8|U|162
4V7I|1|A8|C|163
4V7I|1|A8|C|164
4V7I|1|A8|A|165
4V7I|1|A8|U|166
4V7I|1|A8|A|167
4V7I|1|A8|G|168

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L28