HL_4V7I_024

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

4V7I|1|A8|U|747, 4V7I|1|A8|A|751, 4V7I|1|A8|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_024 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.2962

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

4V7I|1|A8|U|744
4V7I|1|A8|G|745
4V7I|1|A8|U|746
4V7I|1|A8|U|747
4V7I|1|A8|G|748
4V7I|1|A8|A|749
4V7I|1|A8|A|750
4V7I|1|A8|A|751
4V7I|1|A8|A|752
4V7I|1|A8|A|753

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AD

50S ribosomal protein L3

Chain AS

50S ribosomal protein L22