3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
UGUUGAAAAA
Length
10 nucleotides
Bulged bases
4V7I|1|A8|U|747, 4V7I|1|A8|A|751, 4V7I|1|A8|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7I_024 not in the Motif Atlas
Homologous match to HL_7RQB_023
Geometric discrepancy: 0.2962
The information below is about HL_7RQB_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.6
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
6

Unit IDs

4V7I|1|A8|U|744
4V7I|1|A8|G|745
4V7I|1|A8|U|746
4V7I|1|A8|U|747
4V7I|1|A8|G|748
4V7I|1|A8|A|749
4V7I|1|A8|A|750
4V7I|1|A8|A|751
4V7I|1|A8|A|752
4V7I|1|A8|A|753

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain A2
50S ribosomal protein L34
Chain AD
50S ribosomal protein L3
Chain AS
50S ribosomal protein L22

Coloring options:


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