HL_4V7I_100

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_100 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.4423

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7I|1|BA|C|1314
4V7I|1|BA|U|1315
4V7I|1|BA|G|1316
4V7I|1|BA|C|1317
4V7I|1|BA|A|1318
4V7I|1|BA|A|1319
4V7I|1|BA|C|1320
4V7I|1|BA|U|1321
4V7I|1|BA|C|1322
4V7I|1|BA|G|1323

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19