HL_4V7J_023

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

4V7J|1|AA|U|747, 4V7J|1|AA|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_023 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0531

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

4V7J|1|AA|G|744
4V7J|1|AA|G|745
4V7J|1|AA|A|746
4V7J|1|AA|U|747
4V7J|1|AA|G|748
4V7J|1|AA|C|749
4V7J|1|AA|A|750
4V7J|1|AA|A|751
4V7J|1|AA|A|752
4V7J|1|AA|C|753

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A5

50S ribosomal protein L32

Chain A7

50S ribosomal protein L34

Chain AE

50S ribosomal protein L3

Chain AW

50S ribosomal protein L22