HL_4V7J_153

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4V7J|1|BA|A|1780, 4V7J|1|BA|C|1781, 4V7J|1|BA|C|1782, 4V7J|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_153 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0663

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V7J|1|BA|U|1777
4V7J|1|BA|U|1778
4V7J|1|BA|U|1779
4V7J|1|BA|A|1780
4V7J|1|BA|C|1781
4V7J|1|BA|C|1782
4V7J|1|BA|A|1783
4V7J|1|BA|A|1784
4V7J|1|BA|A|1785
4V7J|1|BA|A|1786
4V7J|1|BA|A|1787

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2