HL_4V7J_230

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

4V7J|1|BA|A|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_230 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3517

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7J|1|BA|G|883
4V7J|1|BA|C|884
4V7J|1|BA|C|885
4V7J|1|BA|C|886
4V7J|1|BA|A|887
4V7J|1|BA|C|888
4V7J|1|BA|C|889
4V7J|1|BA|A|890
4V7J|1|BA|G|892
4V7J|1|BA|C|893

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain Bm

30S ribosomal protein S13