HL_4V7M_149
3D structure
- PDB id
- 4V7M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of Capreomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GGAUUGUGAUUCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7M_149 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.5867
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V7M|1|CY|G|28
4V7M|1|CY|G|29
4V7M|1|CY|A|30
4V7M|1|CY|U|31
4V7M|1|CY|U|32
4V7M|1|CY|G|33
4V7M|1|CY|U|34
4V7M|1|CY|G|35
4V7M|1|CY|A|36
4V7M|1|CY|U|37
4V7M|1|CY|U|38
4V7M|1|CY|C|39
4V7M|1|CY|C|40
Current chains
- Chain CY
- tRNA-Gln
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CG
- 30S ribosomal protein S7
- Chain CK
- 30S ribosomal protein S11
- Chain CV
- RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')
- Chain CX
- Transfer RNA; tRNA
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