HL_4V7M_188

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAAGCAAC

Length

9 nucleotides

Bulged bases

4V7M|1|DA|C|1530

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7M_188 not in the Motif Atlas

Geometric match to HL_4V88_190

Geometric discrepancy: 0.3468

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

4V7M|1|DA|G|1526
4V7M|1|DA|G|1527
4V7M|1|DA|A|1528
4V7M|1|DA|A|1528|||A
4V7M|1|DA|G|1529
4V7M|1|DA|C|1530
4V7M|1|DA|A|1544
4V7M|1|DA|A|1545
4V7M|1|DA|C|1546

Current chains

Chain DA

23S ribosomal RNA

Nearby chains