HL_4V7R_029

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

4V7R|1|A1|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_029 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2038

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V7R|1|A1|C|1309
4V7R|1|A1|U|1310
4V7R|1|A1|U|1311
4V7R|1|A1|A|1312
4V7R|1|A1|A|1313
4V7R|1|A1|U|1314
4V7R|1|A1|U|1315
4V7R|1|A1|G|1316

Current chains

Chain A1

18S ribosomal RNA

Nearby chains