HL_4V7R_057

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4V7R|1|B1|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_057 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1968

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7R|1|B1|G|910
4V7R|1|B1|C|911
4V7R|1|B1|G|912
4V7R|1|B1|A|913
4V7R|1|B1|A|914
4V7R|1|B1|A|915
4V7R|1|B1|G|916
4V7R|1|B1|A|917
4V7R|1|B1|C|918

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L2

Chain Bd

60S ribosomal protein L37-A