HL_4V7R_060

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

4V7R|1|B1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_060 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.3685

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V7R|1|B1|C|1076
4V7R|1|B1|U|1077
4V7R|1|B1|U|1078
4V7R|1|B1|A|1079
4V7R|1|B1|A|1080
4V7R|1|B1|U|1081
4V7R|1|B1|U|1082
4V7R|1|B1|G|1083

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BE

60S ribosomal protein L5

Chain Bp

Unassigned secondary structure