HL_4V7R_082

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

4V7R|1|B1|A|2138, 4V7R|1|B1|A|2139, 4V7R|1|B1|U|2140, 4V7R|1|B1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_082 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2335

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V7R|1|B1|U|2135
4V7R|1|B1|C|2136
4V7R|1|B1|U|2137
4V7R|1|B1|A|2138
4V7R|1|B1|A|2139
4V7R|1|B1|U|2140
4V7R|1|B1|U|2141
4V7R|1|B1|A|2142
4V7R|1|B1|A|2143
4V7R|1|B1|A|2144
4V7R|1|B1|A|2145

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L2

Chain Bd

60S ribosomal protein L37-A