HL_4V7R_121

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

4V7R|1|C1|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_121 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.3806

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4V7R|1|C1|G|330
4V7R|1|C1|A|331
4V7R|1|C1|U|332
4V7R|1|C1|A|333
4V7R|1|C1|G|334
4V7R|1|C1|U|335
4V7R|1|C1|G|336
4V7R|1|C1|G|337
4V7R|1|C1|C|338

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CF

40S ribosomal protein S11