HL_4V7R_140

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

4V7R|1|C1|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_140 not in the Motif Atlas

Geometric match to HL_4V88_212

Geometric discrepancy: 0.2142

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7R|1|C1|G|1188
4V7R|1|C1|A|1189
4V7R|1|C1|C|1190
4V7R|1|C1|U|1191
4V7R|1|C1|C|1192
4V7R|1|C1|A|1193
4V7R|1|C1|A|1194
4V7R|1|C1|C|1195
4V7R|1|C1|A|1196
4V7R|1|C1|C|1197

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CJ

40S ribosomal protein S16

Chain CN

40S ribosomal protein S20