HL_4V8E_031

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_031 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.5929

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V8E|1|AA|C|1092
4V8E|1|AA|G|1093
4V8E|1|AA|U|1094
4V8E|1|AA|A|1095
4V8E|1|AA|A|1096
4V8E|1|AA|U|1097
4V8E|1|AA|A|1098
4V8E|1|AA|G|1099

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AH

50S ribosomal protein L6