HL_4V8E_140
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 4V8E|1|CA|A|794, 4V8E|1|CA|U|795, 4V8E|1|CA|A|799
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8E_140 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.1075
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V8E|1|CA|G|792
4V8E|1|CA|G|793
4V8E|1|CA|A|794
4V8E|1|CA|U|795
4V8E|1|CA|G|796
4V8E|1|CA|C|797
4V8E|1|CA|A|798
4V8E|1|CA|A|799
4V8E|1|CA|A|800
4V8E|1|CA|C|801
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C5
- 50S ribosomal protein L32
- Chain C7
- 50S ribosomal protein L34
- Chain CE
- 50S ribosomal protein L3
- Chain CS
- 50S ribosomal protein L22
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