HL_4V8E_218
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8E_218 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.2468
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V8E|1|DA|C|1314
4V8E|1|DA|U|1315
4V8E|1|DA|G|1316
4V8E|1|DA|C|1317
4V8E|1|DA|A|1318
4V8E|1|DA|A|1319
4V8E|1|DA|C|1320
4V8E|1|DA|C|1321
4V8E|1|DA|C|1322
4V8E|1|DA|G|1323
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DP
- 30S RIBOSOMAL PROTEIN S13
- Chain DQ
- 30S RIBOSOMAL PROTEIN S14
- Chain DV
- 30S RIBOSOMAL PROTEIN S19
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