HL_4V8P_021
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 4V8P|1|A1|U|904, 4V8P|1|A1|A|908, 4V8P|1|A1|A|909
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_021 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0864
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|A1|A|901
4V8P|1|A1|C|902
4V8P|1|A1|G|903
4V8P|1|A1|U|904
4V8P|1|A1|G|905
4V8P|1|A1|C|906
4V8P|1|A1|A|907
4V8P|1|A1|A|908
4V8P|1|A1|A|909
4V8P|1|A1|U|910
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain BB
- RIBOSOMAL PROTEIN L3
- Chain BQ
- RPL17
Coloring options: