HL_4V8P_025

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUUAAAUG

Length

8 nucleotides

Bulged bases

4V8P|1|A1|A|1109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_025 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.2153

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V8P|1|A1|C|1104
4V8P|1|A1|U|1105
4V8P|1|A1|U|1106
4V8P|1|A1|A|1107
4V8P|1|A1|A|1108
4V8P|1|A1|A|1109
4V8P|1|A1|U|1110
4V8P|1|A1|G|1111

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AT

RPL29

Chain BM

60S RIBOSOMAL PROTEIN L5

Chain BP

60S RIBOSOMAL PROTEIN L21