HL_4V8P_040
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CGCAUCAG
- Length
- 8 nucleotides
- Bulged bases
- 4V8P|1|A1|C|1870, 4V8P|1|A1|U|1872, 4V8P|1|A1|A|1874
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_040 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.0872
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V8P|1|A1|C|1868
4V8P|1|A1|G|1869
4V8P|1|A1|C|1870
4V8P|1|A1|A|1871
4V8P|1|A1|U|1872
4V8P|1|A1|C|1873
4V8P|1|A1|A|1874
4V8P|1|A1|G|1875
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AB
- RPL39
- Chain BC
- RPL4
- Chain BQ
- RPL17
Coloring options: