HL_4V8P_055
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UUAAACCAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 4V8P|1|A1|A|2626, 4V8P|1|A1|C|2633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_055 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1367
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
4V8P|1|A1|U|2622
4V8P|1|A1|U|2623
4V8P|1|A1|A|2624
4V8P|1|A1|A|2625
4V8P|1|A1|A|2626
4V8P|1|A1|C|2627
4V8P|1|A1|C|2628
4V8P|1|A1|A|2629
4V8P|1|A1|U|2630
4V8P|1|A1|A|2631
4V8P|1|A1|A|2632
4V8P|1|A1|C|2633
4V8P|1|A1|G|2634
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AT
- RPL29
- Chain BH
- 60S RIBOSOMAL PROTEIN L10
- Chain BP
- 60S RIBOSOMAL PROTEIN L21
Coloring options: