HL_4V8P_259

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4V8P|1|H1|A|938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_259 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1259

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8P|1|H1|G|935
4V8P|1|H1|C|936
4V8P|1|H1|G|937
4V8P|1|H1|A|938
4V8P|1|H1|A|939
4V8P|1|H1|A|940
4V8P|1|H1|G|941
4V8P|1|H1|A|942
4V8P|1|H1|C|943

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GA

RPL8

Chain GL

RIBOSOMAL PROTEIN L15

Chain HA

RIBOSOMAL PROTEIN L37