3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
CGCAUCAG
Length
8 nucleotides
Bulged bases
4V8P|1|H1|C|1870, 4V8P|1|H1|U|1872, 4V8P|1|H1|A|1874
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8P_277 not in the Motif Atlas
Homologous match to HL_5TBW_041
Geometric discrepancy: 0.0929
The information below is about HL_5TBW_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56817.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

4V8P|1|H1|C|1868
4V8P|1|H1|G|1869
4V8P|1|H1|C|1870
4V8P|1|H1|A|1871
4V8P|1|H1|U|1872
4V8P|1|H1|C|1873
4V8P|1|H1|A|1874
4V8P|1|H1|G|1875

Current chains

Chain H1
26S RRNA

Nearby chains

Chain GC
RPL4
Chain GQ
RPL17
Chain HA
RIBOSOMAL PROTEIN L37
Chain HB
RPL39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4845 s