HL_4V8P_277

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGCAUCAG

Length

8 nucleotides

Bulged bases

4V8P|1|H1|C|1870, 4V8P|1|H1|U|1872, 4V8P|1|H1|A|1874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_277 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.0929

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V8P|1|H1|C|1868
4V8P|1|H1|G|1869
4V8P|1|H1|C|1870
4V8P|1|H1|A|1871
4V8P|1|H1|U|1872
4V8P|1|H1|C|1873
4V8P|1|H1|A|1874
4V8P|1|H1|G|1875

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GC

RPL4

Chain GQ

RPL17

Chain HA

RIBOSOMAL PROTEIN L37

Chain HB

RPL39