HL_4V8P_292

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUAAACCAUAACG

Length

13 nucleotides

Bulged bases

4V8P|1|H1|A|2626, 4V8P|1|H1|C|2633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_292 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1401

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

4V8P|1|H1|U|2622
4V8P|1|H1|U|2623
4V8P|1|H1|A|2624
4V8P|1|H1|A|2625
4V8P|1|H1|A|2626
4V8P|1|H1|C|2627
4V8P|1|H1|C|2628
4V8P|1|H1|A|2629
4V8P|1|H1|U|2630
4V8P|1|H1|A|2631
4V8P|1|H1|A|2632
4V8P|1|H1|C|2633
4V8P|1|H1|G|2634

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GH

60S RIBOSOMAL PROTEIN L10

Chain GP

60S RIBOSOMAL PROTEIN L21

Chain HT

RPL29