HL_4V8T_008
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 4V8T|1|5|G|283, 4V8T|1|5|A|284, 4V8T|1|5|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8T_008 not in the Motif Atlas
- Homologous match to HL_5TBW_008
- Geometric discrepancy: 0.062
- The information below is about HL_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
4V8T|1|5|U|278
4V8T|1|5|U|279
4V8T|1|5|U|280
4V8T|1|5|G|281
4V8T|1|5|G|282
4V8T|1|5|G|283
4V8T|1|5|A|284
4V8T|1|5|A|285
4V8T|1|5|U|286
4V8T|1|5|G|287
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN L13-A
- Chain N
- 60S RIBOSOMAL PROTEIN L15-A
- Chain a
- 60S RIBOSOMAL PROTEIN L28
- Chain o
- 60S RIBOSOMAL PROTEIN L42-A
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