HL_4V8Z_006

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

4V8Z|1|B2|U|249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.085

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V8Z|1|B2|G|243
4V8Z|1|B2|A|244
4V8Z|1|B2|U|245
4V8Z|1|B2|G|246
4V8Z|1|B2|A|247
4V8Z|1|B2|U|248
4V8Z|1|B2|U|249
4V8Z|1|B2|C|250

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AL

40S RIBOSOMAL PROTEIN S11-A