HL_4V8Z_019
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_019 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.1914
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B2|A|829
4V8Z|1|B2|U|830
4V8Z|1|B2|U|831
4V8Z|1|B2|U|832
4V8Z|1|B2|U|833
4V8Z|1|B2|G|834
4V8Z|1|B2|U|835
4V8Z|1|B2|U|836
4V8Z|1|B2|G|837
4V8Z|1|B2|G|838
4V8Z|1|B2|U|839
4V8Z|1|B2|U|840
4V8Z|1|B2|U|841
4V8Z|1|B2|C|842
4V8Z|1|B2|U|843
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
Coloring options: