HL_4V8Z_026
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 4V8Z|1|B2|A|1196
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_026 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.084
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8Z|1|B2|G|1188
4V8Z|1|B2|A|1189
4V8Z|1|B2|C|1190
4V8Z|1|B2|U|1191
4V8Z|1|B2|C|1192
4V8Z|1|B2|A|1193
4V8Z|1|B2|A|1194
4V8Z|1|B2|C|1195
4V8Z|1|B2|A|1196
4V8Z|1|B2|C|1197
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
- Chain CW
- Transfer RNA; tRNA
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