HL_4V8Z_027
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 4V8Z|1|B2|G|1243
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_027 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.1348
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
4V8Z|1|B2|A|1238
4V8Z|1|B2|U|1239
4V8Z|1|B2|U|1240
4V8Z|1|B2|G|1241
4V8Z|1|B2|A|1242
4V8Z|1|B2|G|1243
4V8Z|1|B2|A|1244
4V8Z|1|B2|G|1245
4V8Z|1|B2|C|1246
4V8Z|1|B2|U|1247
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain A5
- UBIQUITIN-40S RIBOSOMAL PROTEIN S31
- Chain AP
- 40S RIBOSOMAL PROTEIN S15
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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