HL_4V8Z_056

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

4V8Z|1|B5|U|879, 4V8Z|1|B5|A|883, 4V8Z|1|B5|A|884

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_056 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0443

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|A|876
4V8Z|1|B5|C|877
4V8Z|1|B5|G|878
4V8Z|1|B5|U|879
4V8Z|1|B5|G|880
4V8Z|1|B5|C|881
4V8Z|1|B5|A|882
4V8Z|1|B5|A|883
4V8Z|1|B5|A|884
4V8Z|1|B5|U|885

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BP

60S RIBOSOMAL PROTEIN L17-A

Chain Bj

60S RIBOSOMAL PROTEIN L37-A