HL_4V8Z_077

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

4V8Z|1|B5|C|1846, 4V8Z|1|B5|G|1848, 4V8Z|1|B5|A|1850

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_077 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.063

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V8Z|1|B5|C|1844
4V8Z|1|B5|G|1845
4V8Z|1|B5|C|1846
4V8Z|1|B5|A|1847
4V8Z|1|B5|G|1848
4V8Z|1|B5|C|1849
4V8Z|1|B5|A|1850
4V8Z|1|B5|G|1851

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4-A

Chain BP

60S RIBOSOMAL PROTEIN L17-A

Chain Bj

60S RIBOSOMAL PROTEIN L37-A

Chain Bl

60S RIBOSOMAL PROTEIN L39