HL_4V9A_066

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUGCGUAAUAGCUC

Length

16 nucleotides

Bulged bases

4V9A|1|BA|A|1088, 4V9A|1|BA|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_066 not in the Motif Atlas

Homologous match to HL_5J7L_162

Geometric discrepancy: 0.4807

The information below is about HL_5J7L_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04775.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9A|1|BA|G|1087
4V9A|1|BA|A|1088
4V9A|1|BA|G|1089
4V9A|1|BA|U|1090
4V9A|1|BA|G|1091
4V9A|1|BA|C|1092
4V9A|1|BA|G|1093
4V9A|1|BA|U|1094
4V9A|1|BA|A|1095
4V9A|1|BA|A|1096
4V9A|1|BA|U|1097
4V9A|1|BA|A|1098
4V9A|1|BA|G|1099
4V9A|1|BA|C|1100
4V9A|1|BA|U|1101
4V9A|1|BA|C|1102

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6