HL_4V9C_039

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_039 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1182

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9C|1|BA|U|158
4V9C|1|BA|G|159
4V9C|1|BA|A|160
4V9C|1|BA|A|161
4V9C|1|BA|U|162
4V9C|1|BA|C|163
4V9C|1|BA|C|164
4V9C|1|BA|A|165
4V9C|1|BA|U|166
4V9C|1|BA|A|167
4V9C|1|BA|G|168

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L28