HL_4V9C_186

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_186 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.2046

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9C|1|DA|G|1910
4V9C|1|DA|U|1911
4V9C|1|DA|A|1912
4V9C|1|DA|A|1913
4V9C|1|DA|C|1914
4V9C|1|DA|U|1915
4V9C|1|DA|A|1916
4V9C|1|DA|U|1917
4V9C|1|DA|A|1918
4V9C|1|DA|A|1919
4V9C|1|DA|C|1920

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CY

Ribosome recycling factor, RRF