HL_4V9I_021
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 4V9I|1|AA|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_021 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0962
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|AA|G|963
4V9I|1|AA|A|964
4V9I|1|AA|A|965
4V9I|1|AA|G|966
4V9I|1|AA|C|967
4V9I|1|AA|A|968
4V9I|1|AA|A|969
4V9I|1|AA|C|970
4V9I|1|AA|G|971
4V9I|1|AA|C|972
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AI
- 30S Ribosomal protein S9
- Chain AJ
- 30S Ribosomal protein S10
- Chain AM
- 30S Ribosomal protein S13
- Chain AV
- Transfer RNA; tRNA
- Chain AY
- A-SITE tRNA
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