HL_4V9I_078

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAGCCCGCAAC

Length

13 nucleotides

Bulged bases

4V9I|1|BA|C|1578, 4V9I|1|BA|G|1579

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_078 not in the Motif Atlas

Geometric match to HL_4V88_190

Geometric discrepancy: 0.3452

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

4V9I|1|BA|G|1571
4V9I|1|BA|G|1572
4V9I|1|BA|A|1573
4V9I|1|BA|A|1574
4V9I|1|BA|G|1575
4V9I|1|BA|C|1576
4V9I|1|BA|C|1577
4V9I|1|BA|C|1578
4V9I|1|BA|G|1579
4V9I|1|BA|C|1589
4V9I|1|BA|A|1590
4V9I|1|BA|A|1591
4V9I|1|BA|C|1592

Current chains

Chain BA

23S ribosomal RNA

Nearby chains