HL_4V9I_132

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4V9I|1|CA|G|949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_132 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1325

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9I|1|CA|G|941
4V9I|1|CA|A|942
4V9I|1|CA|A|943
4V9I|1|CA|G|944
4V9I|1|CA|C|945
4V9I|1|CA|A|946
4V9I|1|CA|A|947
4V9I|1|CA|C|948
4V9I|1|CA|G|949
4V9I|1|CA|C|950

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S Ribosomal protein S9

Chain CJ

30S Ribosomal protein S10

Chain CM

30S Ribosomal protein S13

Chain CN

30S Ribosomal protein S14

Chain CV

Transfer RNA; tRNA

Chain CY

A-SITE tRNA