HL_4V9I_135

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4V9I|1|CA|G|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_135 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1227

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V9I|1|CA|G|1072
4V9I|1|CA|U|1073
4V9I|1|CA|U|1074
4V9I|1|CA|A|1075
4V9I|1|CA|A|1076
4V9I|1|CA|G|1077
4V9I|1|CA|U|1078
4V9I|1|CA|C|1079

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal protein S2

Chain CG

30S Ribosomal protein S7