HL_4V9I_196

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4V9I|1|DA|A|1810, 4V9I|1|DA|C|1811, 4V9I|1|DA|C|1812, 4V9I|1|DA|A|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_196 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0659

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V9I|1|DA|U|1807
4V9I|1|DA|U|1808
4V9I|1|DA|U|1809
4V9I|1|DA|A|1810
4V9I|1|DA|C|1811
4V9I|1|DA|C|1812
4V9I|1|DA|A|1813
4V9I|1|DA|A|1814
4V9I|1|DA|A|1815
4V9I|1|DA|A|1816
4V9I|1|DA|A|1817

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2

Chain DW

50S ribosomal protein L22