HL_4V9I_217

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V9I|1|DA|G|2763, 4V9I|1|DA|C|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_217 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0882

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V9I|1|DA|C|2757
4V9I|1|DA|U|2758
4V9I|1|DA|G|2759
4V9I|1|DA|A|2760
4V9I|1|DA|A|2761
4V9I|1|DA|A|2762
4V9I|1|DA|G|2763
4V9I|1|DA|C|2764
4V9I|1|DA|A|2765
4V9I|1|DA|U|2766
4V9I|1|DA|C|2767
4V9I|1|DA|U|2768
4V9I|1|DA|A|2769
4V9I|1|DA|A|2770
4V9I|1|DA|G|2771

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6

Chain DN

50S ribosomal protein L13