HL_4V9L_133

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4V9L|1|CA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_133 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1379

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V9L|1|CA|G|1089
4V9L|1|CA|U|1090
4V9L|1|CA|U|1091
4V9L|1|CA|A|1092
4V9L|1|CA|A|1093
4V9L|1|CA|G|1094
4V9L|1|CA|U|1095
4V9L|1|CA|C|1096

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CG

30S ribosomal protein S7

Chain CV

messenger RNA