HL_4WR6_208

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

4WR6|1|1J|U|41||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WR6_208 not in the Motif Atlas

Geometric match to HL_1MJI_002

Geometric discrepancy: 0.2054

The information below is about HL_1MJI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4WR6|1|1J|C|38||||P_1
4WR6|1|1J|A|39||||P_1
4WR6|1|1J|U|40||||P_1
4WR6|1|1J|U|41||||P_1
4WR6|1|1J|C|42||||P_1
4WR6|1|1J|C|43||||P_1
4WR6|1|1J|G|44||||P_1

Current chains

Chain 1J

5S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 49

50S ribosomal protein L5

Chain 65

50S ribosomal protein L18

Chain I5

50S ribosomal protein L31