HL_4WR6_249

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GG(5MU)(PSU)CAAAUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WR6_249 not in the Motif Atlas

Homologous match to HL_5E81_236

Geometric discrepancy: 0.082

The information below is about HL_5E81_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WR6|1|2K|G|53||||P_1
4WR6|1|2K|G|54||||P_1
4WR6|1|2K|5MU|55||||P_1
4WR6|1|2K|PSU|56||||P_1
4WR6|1|2K|C|57||||P_1
4WR6|1|2K|A|58||||P_1
4WR6|1|2K|A|59||||P_1
4WR6|1|2K|A|60||||P_1
4WR6|1|2K|U|61||||P_1
4WR6|1|2K|C|62||||P_1
4WR6|1|2K|C|63||||P_1

Current chains

Chain 2K

tRNA-fMet

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 41

50S ribosomal protein L5

Chain 88

50S ribosomal protein L16