HL_4WT8_100

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAGCCCGCAAC

Length

13 nucleotides

Bulged bases

4WT8|1|C1|C|1578, 4WT8|1|C1|G|1579

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_100 not in the Motif Atlas

Geometric match to HL_4V88_190

Geometric discrepancy: 0.3366

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

4WT8|1|C1|G|1571
4WT8|1|C1|G|1572
4WT8|1|C1|A|1573
4WT8|1|C1|A|1574
4WT8|1|C1|G|1575
4WT8|1|C1|C|1576
4WT8|1|C1|C|1577
4WT8|1|C1|C|1578
4WT8|1|C1|G|1579
4WT8|1|C1|C|1589
4WT8|1|C1|A|1590
4WT8|1|C1|A|1591
4WT8|1|C1|C|1592

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CQ

50S ribosomal protein L17