HL_4WT8_128

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WT8|1|C1|G|2763, 4WT8|1|C1|C|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_128 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1025

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WT8|1|C1|C|2757
4WT8|1|C1|U|2758
4WT8|1|C1|G|2759
4WT8|1|C1|A|2760
4WT8|1|C1|A|2761
4WT8|1|C1|A|2762
4WT8|1|C1|G|2763
4WT8|1|C1|C|2764
4WT8|1|C1|A|2765
4WT8|1|C1|U|2766
4WT8|1|C1|C|2767
4WT8|1|C1|U|2768
4WT8|1|C1|A|2769
4WT8|1|C1|A|2770
4WT8|1|C1|G|2771

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C0

50S ribosomal protein L36

Chain CF

50S ribosomal protein L6

Chain CM

50S ribosomal protein L13