HL_4WT8_165

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

4WT8|1|D1|U|793, 4WT8|1|D1|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_165 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0831

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

4WT8|1|D1|G|790
4WT8|1|D1|G|791
4WT8|1|D1|A|792
4WT8|1|D1|U|793
4WT8|1|D1|G|794
4WT8|1|D1|C|795
4WT8|1|D1|A|796
4WT8|1|D1|A|797
4WT8|1|D1|A|798
4WT8|1|D1|C|799

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D6

50S ribosomal protein L32

Chain D8

50S ribosomal protein L34

Chain DC

50S ribosomal protein L3

Chain DW

50S ribosomal protein L22