HL_4WWW_140

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_140 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1403

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WWW|1|YA|U|158
4WWW|1|YA|G|159
4WWW|1|YA|A|160
4WWW|1|YA|A|161
4WWW|1|YA|U|162
4WWW|1|YA|C|163
4WWW|1|YA|C|164
4WWW|1|YA|A|165
4WWW|1|YA|U|166
4WWW|1|YA|A|167
4WWW|1|YA|G|168

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YX

50S ribosomal protein L28