HL_4WWW_146

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4WWW|1|YA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_146 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1392

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4WWW|1|YA|A|382
4WWW|1|YA|C|383
4WWW|1|YA|A|384
4WWW|1|YA|C|385
4WWW|1|YA|G|386
4WWW|1|YA|U|387
4WWW|1|YA|G|388
4WWW|1|YA|G|389
4WWW|1|YA|U|390
4WWW|1|YA|A|391
4WWW|1|YA|U|392

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L35

Chain YX

50S ribosomal protein L28